Side note - I had a much more elaborate response written but for some reason I posted the response in the wrong thread. So due to the forum's spam filter, this is a condensed version of my response.
Answer to Question #1
No manual recordings have been set to my knowledge. I assume these recordings were scheduled by the Show Pass created through Channels.
Answer to Question #2
Unfortunately, the logs don't go back far enough (only ~36 hours in the UI) to provide an answer to this question. This also means that the logs I previously submitted to support may not be helpful unless they somehow include historical logs dating back to Jan 19.
I'll keep an eye out for a recurrence of this behavior and will capture logs if/when it happens again.
In response to the point about my other thread
I'm glad you picked up on this because I briefly wondered how "Re-record Episodes if Deleted" would function within my use case. However, I've been removing commercials from recorded content and then importing the modified files to the Library in the same fashion for months with no issues.
In fact, my workflow does not include deleting any content until the modified content has been fully verified for functionality and accuracy within Channels. When I do finally delete anything, it is being done via the Channels DVR Web UI, not programmatically via script or manually via the Host OS.