I’m not sure exactly which bits of log file relate to which steps in the process, but here as best as I can see is the relevant chunk of the logs.
2017/05/06 08:25:20 [HLS] Starting transcoder for file-113 at 4m24s (encoder=h264_videotoolbox, resolution=1080, deinterlacer=blend, bitrate=10000)
[mpegts @ 0x7f8107808a00] start time for stream 4 is not set in estimate_timings_from_pts
[mpegts @ 0x7f8107808a00] start time for stream 7 is not set in estimate_timings_from_pts
[mpegts @ 0x7f8107808a00] Dropped corrupted packet (stream = 1)
[mpegts @ 0x7f8107808a00] Dropped corrupted packet (stream = 2)
[mpegts @ 0x7f8107808a00] Could not find codec parameters for stream 5 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7f8107808a00] Could not find codec parameters for stream 6 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7f8107808a00] Dropped corrupted packet (stream = 1)
2017/05/06 08:25:29 [HLS] Stopping transcoder for file-113 after seek to 4m8s (out=6m31.680011s, finished=false)
2017/05/06 08:25:29 [HLS] Starting transcoder for file-113 at 4m8s (encoder=h264_videotoolbox, resolution=1080, deinterlacer=blend, bitrate=10000)
[mpegts @ 0x7fd214000000] start time for stream 4 is not set in estimate_timings_from_pts
[mpegts @ 0x7fd214000000] start time for stream 7 is not set in estimate_timings_from_pts
[mpegts @ 0x7fd214000000] Dropped corrupted packet (stream = 1)
[mpegts @ 0x7fd214000000] Dropped corrupted packet (stream = 2)
[mpegts @ 0x7fd214000000] Could not find codec parameters for stream 5 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fd214000000] Could not find codec parameters for stream 6 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fd214000000] Dropped corrupted packet (stream = 1)
2017/05/06 08:25:47 [HLS] Pausing transcoder (out: 8m25.800011s, view: 5m20s)...
2017/05/06 08:26:01 [HLS] Stopping transcoder session file-113 @ 8m25.800011s
2017/05/06 08:26:01 [HLS] Resuming transcoder (out: 8m25.800011s, view: 5m32s)...
2017/05/06 08:30:30 [HLS] Starting transcoder for file-113 at 5m6s (encoder=h264_videotoolbox, resolution=1080, deinterlacer=blend, bitrate=10000)
[mpegts @ 0x7fa40e002e00] start time for stream 4 is not set in estimate_timings_from_pts
[mpegts @ 0x7fa40e002e00] start time for stream 7 is not set in estimate_timings_from_pts
[mpegts @ 0x7fa40e002e00] Dropped corrupted packet (stream = 1)
[mpegts @ 0x7fa40e002e00] Dropped corrupted packet (stream = 2)
[mpegts @ 0x7fa40e002e00] Could not find codec parameters for stream 5 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fa40e002e00] Could not find codec parameters for stream 6 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fa40e002e00] Dropped corrupted packet (stream = 1)
2017/05/06 08:30:45 [HLS] Stopping transcoder session file-113 @ 8m19.880011s
2017/05/06 08:31:00 [HLS] Starting transcoder for file-113 at 5m18s (encoder=h264_videotoolbox, resolution=1080, deinterlacer=blend, bitrate=10000)
[mpegts @ 0x7faa4c800000] start time for stream 4 is not set in estimate_timings_from_pts
[mpegts @ 0x7faa4c800000] start time for stream 7 is not set in estimate_timings_from_pts
[mpegts @ 0x7faa4c800000] Dropped corrupted packet (stream = 1)
[mpegts @ 0x7faa4c800000] Dropped corrupted packet (stream = 2)
[mpegts @ 0x7faa4c800000] Could not find codec parameters for stream 5 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7faa4c800000] Could not find codec parameters for stream 6 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7faa4c800000] Dropped corrupted packet (stream = 1)
2017/05/06 08:31:01 [HLS] Stopping transcoder for file-113 after seek to 5m2s (out=5m23.120011s, finished=false)
2017/05/06 08:31:01 [HLS] Starting transcoder for file-113 at 5m2s (encoder=h264_videotoolbox, resolution=1080, deinterlacer=blend, bitrate=10000)
[mpegts @ 0x7fa09f000600] start time for stream 4 is not set in estimate_timings_from_pts
[mpegts @ 0x7fa09f000600] start time for stream 7 is not set in estimate_timings_from_pts
[mpegts @ 0x7fa09f000600] Dropped corrupted packet (stream = 1)
[mpegts @ 0x7fa09f000600] Dropped corrupted packet (stream = 2)
[mpegts @ 0x7fa09f000600] Could not find codec parameters for stream 5 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fa09f000600] Could not find codec parameters for stream 6 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fa09f000600] Dropped corrupted packet (stream = 1)
2017/05/06 08:31:18 [HLS] Pausing transcoder (out: 9m8.880011s, view: 6m8s)...
2017/05/06 08:33:08 [HLS] Resuming transcoder (out: 9m8.880011s, view: 7m40s)...
2017/05/06 08:33:15 [HLS] Pausing transcoder (out: 10m50.360011s, view: 7m44s)...
2017/05/06 08:35:10 [HLS] Resuming transcoder (out: 10m50.360011s, view: 9m22s)...
2017/05/06 08:35:17 [HLS] Pausing transcoder (out: 12m32.920011s, view: 9m26s)...
2017/05/06 08:37:13 [HLS] Resuming transcoder (out: 12m32.920011s, view: 11m4s)...
2017/05/06 08:37:20 [HLS] Pausing transcoder (out: 14m14.840011s, view: 11m8s)...
2017/05/06 08:40:35 [HLS] Stopping transcoder session file-113 @ 14m14.840011s
2017/05/06 08:40:35 [HLS] Resuming transcoder (out: 14m14.840011s, view: 12m42s)...
2017/05/06 08:40:37 [HLS] Starting transcoder for file-113 at 14m12s (encoder=h264_videotoolbox, resolution=1080, deinterlacer=blend, bitrate=10000)
[mpegts @ 0x7fc21a00a400] start time for stream 4 is not set in estimate_timings_from_pts
[mpegts @ 0x7fc21a00a400] start time for stream 7 is not set in estimate_timings_from_pts
[mpegts @ 0x7fc21a00a400] Dropped corrupted packet (stream = 1)
[mpegts @ 0x7fc21a00a400] Dropped corrupted packet (stream = 2)
[mpegts @ 0x7fc21a00a400] Could not find codec parameters for stream 5 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fc21a00a400] Could not find codec parameters for stream 6 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fc21a00a400] Dropped corrupted packet (stream = 1)
2017/05/06 08:40:54 [HLS] Pausing transcoder (out: 18m7.242667s, view: 15m6s)...
2017/05/06 08:42:43 [HLS] Resuming transcoder (out: 18m7.242667s, view: 16m38s)...
2017/05/06 08:42:50 [HLS] Pausing transcoder (out: 19m49.160011s, view: 16m44s)...
2017/05/06 08:44:46 [HLS] Resuming transcoder (out: 19m49.160011s, view: 18m20s)...
2017/05/06 08:44:53 [HLS] Pausing transcoder (out: 21m30.840011s, view: 18m24s)...
2017/05/06 08:46:48 [HLS] Resuming transcoder (out: 21m30.840011s, view: 20m2s)...
2017/05/06 08:46:54 [HLS] Pausing transcoder (out: 23m6.040011s, view: 20m6s)...
2017/05/06 08:50:03 [HLS] Stopping transcoder session file-113 @ 23m6.040011s
2017/05/06 08:50:03 [HLS] Resuming transcoder (out: 23m6.040011s, view: 21m36s)...
2017/05/06 08:50:06 [HLS] Starting transcoder for file-113 at 23m34s (encoder=h264_videotoolbox, resolution=1080, deinterlacer=blend, bitrate=10000)
[mpegts @ 0x7fbc26000000] start time for stream 4 is not set in estimate_timings_from_pts
[mpegts @ 0x7fbc26000000] start time for stream 7 is not set in estimate_timings_from_pts
[mpegts @ 0x7fbc26000000] Dropped corrupted packet (stream = 1)
[mpegts @ 0x7fbc26000000] Dropped corrupted packet (stream = 2)
[mpegts @ 0x7fbc26000000] Could not find codec parameters for stream 5 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fbc26000000] Could not find codec parameters for stream 6 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fbc26000000] Dropped corrupted packet (stream = 1)
2017/05/06 08:50:07 [HLS] Stopping transcoder for file-113 after seek to 23m18s (out=23m40.440011s, finished=false)
2017/05/06 08:50:07 [HLS] Starting transcoder for file-113 at 23m18s (encoder=h264_videotoolbox, resolution=1080, deinterlacer=blend, bitrate=10000)
[mpegts @ 0x7fbf2a000000] start time for stream 4 is not set in estimate_timings_from_pts
[mpegts @ 0x7fbf2a000000] start time for stream 7 is not set in estimate_timings_from_pts
[mpegts @ 0x7fbf2a000000] Dropped corrupted packet (stream = 1)
[mpegts @ 0x7fbf2a000000] Dropped corrupted packet (stream = 2)
[mpegts @ 0x7fbf2a000000] Could not find codec parameters for stream 5 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fbf2a000000] Could not find codec parameters for stream 6 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fbf2a000000] Dropped corrupted packet (stream = 1)
2017/05/06 08:50:24 [HLS] Pausing transcoder (out: 27m29.306667s, view: 24m24s)...
2017/05/06 08:52:18 [HLS] Resuming transcoder (out: 27m29.306667s, view: 26m0s)...
2017/05/06 08:52:24 [HLS] Pausing transcoder (out: 29m9.040011s, view: 26m4s)...
2017/05/06 08:54:18 [HLS] Resuming transcoder (out: 29m9.040011s, view: 27m40s)...
2017/05/06 08:54:25 [HLS] Pausing transcoder (out: 30m49.760011s, view: 27m44s)...
2017/05/06 08:56:18 [HLS] Resuming transcoder (out: 30m49.760011s, view: 29m20s)...
2017/05/06 08:56:25 [HLS] Pausing transcoder (out: 32m30.725333s, view: 29m26s)...
2017/05/06 09:01:33 [HLS] Stopping transcoder session file-113 @ 32m30.725333s
2017/05/06 09:01:33 [HLS] Resuming transcoder (out: 32m30.725333s, view: 30m58s)...
2017/05/06 09:07:08 [HLS] Starting transcoder for file-113 at 32m28s (encoder=h264_videotoolbox, resolution=1080, deinterlacer=blend, bitrate=10000)
[mpegts @ 0x7fbacf00a400] start time for stream 4 is not set in estimate_timings_from_pts
[mpegts @ 0x7fbacf00a400] start time for stream 7 is not set in estimate_timings_from_pts
[mpegts @ 0x7fbacf00a400] Dropped corrupted packet (stream = 1)
[mpegts @ 0x7fbacf00a400] Dropped corrupted packet (stream = 2)
[mpegts @ 0x7fbacf00a400] Could not find codec parameters for stream 5 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fbacf00a400] Could not find codec parameters for stream 6 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fbacf00a400] Dropped corrupted packet (stream = 1)
2017/05/06 09:07:09 [HLS] Stopping transcoder for file-113 after seek to 32m12s (out=32m34.442667s, finished=false)
2017/05/06 09:07:09 [HLS] Starting transcoder for file-113 at 32m12s (encoder=h264_videotoolbox, resolution=1080, deinterlacer=blend, bitrate=10000)
[mpegts @ 0x7fb235000000] start time for stream 4 is not set in estimate_timings_from_pts
[mpegts @ 0x7fb235000000] start time for stream 7 is not set in estimate_timings_from_pts
[mpegts @ 0x7fb235000000] Dropped corrupted packet (stream = 1)
[mpegts @ 0x7fb235000000] Dropped corrupted packet (stream = 2)
[mpegts @ 0x7fb235000000] Could not find codec parameters for stream 5 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fb235000000] Could not find codec parameters for stream 6 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fb235000000] Dropped corrupted packet (stream = 1)
2017/05/06 09:07:26 [HLS] Pausing transcoder (out: 36m18.784s, view: 33m18s)...
2017/05/06 09:08:09 [HLS] Stopping transcoder session file-113 @ 36m18.784s
2017/05/06 09:08:09 [HLS] Resuming transcoder (out: 36m18.784s, view: 33m54s)...
2017/05/06 09:08:29 [HLS] Starting transcoder for file-105 at 0s (encoder=remux, resolution=1080, deinterlacer=blend, bitrate=10000)
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] non-existing PPS 0 referenced
[h264 @ 0x7fac7b82a600] decode_slice_header error
[h264 @ 0x7fac7b82a600] no frame!
[h264 @ 0x7fac7b82a600] mmco: unref short failure
Last message repeated 1 times
[mpegts @ 0x7fac7b80c800] start time for stream 2 is not set in estimate_timings_from_pts
[mpegts @ 0x7fac7b80c800] start time for stream 4 is not set in estimate_timings_from_pts
[mpegts @ 0x7fac7b80c800] start time for stream 7 is not set in estimate_timings_from_pts
[mpegts @ 0x7fac7b80c800] Dropped corrupted packet (stream = 1)
[mpegts @ 0x7fac7b80c800] Dropped corrupted packet (stream = 2)
[mpegts @ 0x7fac7b80c800] Could not find codec parameters for stream 2 (Audio: aac_latm ([17][0][0][0] / 0x0011), 0 channels, fltp): unspecified sample rate
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fac7b80c800] Could not find codec parameters for stream 5 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[mpegts @ 0x7fac7b80c800] Could not find codec parameters for stream 6 (Unknown: none ([11][0][0][0] / 0x000B)): unknown codec
Consider increasing the value for the 'analyzeduration' and 'probesize' options
[hls @ 0x7fac7b843600] Timestamps are unset in a packet for stream 0. This is deprecated and will stop working in the future. Fix your code to set the timestamps properly
[mpegts @ 0x7fac7b000000] Timestamps are unset in a packet for stream 0. This is deprecated and will stop working in the future. Fix your code to set the timestamps properly