This is a recurring issue for me, that seems to only affect Law & Order shows (that I’ve noticed). Channels will show a particular episode as available, but on the Mac mini it is running on, that episode (file) is in the Trash. In the logs there is no reference to that episode being pruned. At the moment there are 6 episodes of Law & Order that Channels tells me are available but in fact all 6 are in the (Mac) Trash.
Any ideas on this? Is it a naming thing causing a problem for Channels (grasping at straws)? It appears that Channels is pruning episodes, but losing track of some.